No. words: 1709; after pruning: 1670


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:600)  590  0.17 0.00 0.00  UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1        1   601 (58)  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   (50)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   651 
   58    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1     8 
   70  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   582 
   78    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1    28 
   86  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   566 
  122    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1    72 
  138  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   514 
  174    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   124 
  226  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   426 
  234    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   184 
  246  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   406 
  274    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   224 
  319  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   333 
  387    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   337 
  399  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   253 
  407    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   357 
  423  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1   229 
  543    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   493 
  599  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1    53 
  603    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   553 
  619  C UCD016R_G11_BE489901AS02P012B04B101R1_083.ab1    33 
  627    UCD016F_G11_BE489901AS02P012B04B101F1_083.ab1   577 
Contig length: old 709, new 709

Contig length: old 709, new 709
New start: 0