No. words: 1632; after pruning: 1606


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:657)  649  0.00 0.00 0.00  UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1        1   658 (196)  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1   (120)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1   778 
  140    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1    20 
  144  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1   635 
  148    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1    28 
  164  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1   615 
  168    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1    48 
  176  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1   603 
  232    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1   112 
  716  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1    63 
  720    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1   600 
  724  C UCD004R_F05_BE489901LD02P012B04B101R1_037.ab1    55 
  748    UCD004F_F05_BE489901LD02P012B04B101F1_037.ab1   628 
Contig length: old 974, new 974

Contig length: old 974, new 974
New start: 0