No. words: 1598; after pruning: 1572


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:642)  628  0.00 0.31 0.00  UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1        1   642 (126)  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   (186)   644     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   830 
  217    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1    29 
  233  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   598 
  237    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1    49 
  249  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   582 
  269    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1    81 
  273  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   558 
  293    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1   105 
  341  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1   490 
  349    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1   161 
  769  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1    62 
  777    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1   589 
  781  C UCD004R_G05_BE489901LD03P012B04B101R1_035.ab1    50 
  809    UCD004F_G05_BE489901LD03P012B04B101F1_035.ab1   621 
Contig length: old 955, new 956

Contig length: old 956, new 956
New start: 0