No. words: 1647; after pruning: 1621


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 13.1 (1,1:667)  651  0.00 0.00 0.00  UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1        1   661 (121)  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   (197)   668     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   865 
  209    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1    12 
  221  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   645 
  225    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1    28 
  241  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   625 
  245    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1    48 
  257  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   609 
  293    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1    96 
  301  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   565 
  309    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   112 
  465  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   401 
  721    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   524 
  725  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   141 
  749    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   552 
  765  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1   101 
  777    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   580 
  781  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1    85 
  785    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   588 
  789  C UCD004R_A06_BE489901LD05P012B04B101R1_048.ab1    77 
  841    UCD004F_A06_BE489901LD05P012B04B101F1_048.ab1   644 
Contig length: old 979, new 979

Contig length: old 979, new 979
New start: 0