No. words: 1227; after pruning: 1201


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:677)  441  2.67 0.00 0.00  UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1        1   487 (0)  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   (62)   678   192 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   740 
   75    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1    13 
   95  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   646 
   99    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1    37 
  107  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   634 
  125    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1    63 
  129  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   612 
  133    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1    71 
  141  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   600 
  165    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1   103 
  177  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   564 
  181    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1   119 
  221  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   520 
  233    UCD004F_B06_BE489901LD06P012B04B101F1_046.ab1   171 
  277  C UCD004R_B06_BE489901LD06P012B04B101R1_046.ab1   464 
Contig length: old 740, new 740

Contig length: old 740, new 740
New start: 0