No. words: 1308; after pruning: 1282


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:659)  505  0.95 0.00 0.00  UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1        1   529 (0)  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   (119)   660   132 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   779 
  131    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1    12 
  143  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   637 
  147    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1    28 
  159  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   621 
  175    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1    56 
  199  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   581 
  207    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1    88 
  227  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   553 
  231    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1   112 
  383  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   397 
  419    UCD004F_C06_BE489901LD07P012B04B101F1_044.ab1   300 
  423  C UCD004R_C06_BE489901LD07P012B04B101R1_044.ab1   357 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0