No. words: 1601; after pruning: 1561


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:642)  628  0.00 0.16 0.16  UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1        1   643 (126)  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1   (189)   643     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1   832 
  216    UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1    26 
  236  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1   597 
  240    UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1    50 
  252  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1   581 
  276    UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1    86 
  280  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1   553 
  704    UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1   514 
  800  C UCD004R_D06_BE489901LD08P012B04B101R1_042.ab1    34 
  808    UCD004F_D06_BE489901LD08P012B04B101F1_042.ab1   618 
Contig length: old 958, new 959

Contig length: old 959, new 959
New start: 0 
S Change at: 111; seg lengths: entry 1, contig 1