No. words: 1632; after pruning: 1606


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:656)  648  0.00 0.00 0.00  UCD004F_E06_BE489901LD09P012B04B101F1_040.ab1        1   657 (199)  C UCD004R_E06_BE489901LD09P012B04B101R1_040.ab1   (119)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD004R_E06_BE489901LD09P012B04B101R1_040.ab1   776 
  147    UCD004F_E06_BE489901LD09P012B04B101F1_040.ab1    28 
  163  C UCD004R_E06_BE489901LD09P012B04B101R1_040.ab1   614 
  167    UCD004F_E06_BE489901LD09P012B04B101F1_040.ab1    48 
  179  C UCD004R_E06_BE489901LD09P012B04B101R1_040.ab1   598 
  639    UCD004F_E06_BE489901LD09P012B04B101F1_040.ab1   520 
  735  C UCD004R_E06_BE489901LD09P012B04B101R1_040.ab1    42 
  743    UCD004F_E06_BE489901LD09P012B04B101F1_040.ab1   624 
Contig length: old 975, new 975

Contig length: old 975, new 975
New start: 0