No. words: 1802; after pruning: 1763


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:613)  481  4.27 0.18 0.00  UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1       24   585 (0)  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   (0)   592    30 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1     1 
  173  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   442 
  177    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   177 
  203  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   412 
  207    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   207 
  211  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   404 
  215    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   215 
  243  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   372 
  255    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   255 
  259  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   356 
  267    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   267 
  283  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   332 
  299    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   299 
  303  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   312 
  339    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   339 
  347  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1   268 
  566    UCD016F_D11_BE489901TU01P012B04B101F1_089.ab1   566 
  580  C UCD016R_D11_BE489901TU01P012B04B101R1_089.ab1    35 
Contig length: old 614, new 614

Contig length: old 614, new 614
New start: 0 
S Change at: 535; seg lengths: entry 1, contig 1