No. words: 1077; after pruning: 1051


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:510)  461  2.20 0.00 0.00  UCD029F_A11_BE489901Ta11P036G06P012B101F1_095.ab1        1   499 (0)  C UCD029R_A11_BE489901Ta11P036G06P012B101R1_095.ab1   (67)   511    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD029R_A11_BE489901Ta11P036G06P012B101R1_095.ab1   578 
  532    UCD029F_A11_BE489901Ta11P036G06P012B101F1_095.ab1   465 
  536  C UCD029R_A11_BE489901Ta11P036G06P012B101R1_095.ab1    43 
Contig length: old 578, new 578

Contig length: old 578, new 578
New start: 0