No. words: 1084; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:452)  437  0.66 0.00 0.00  UCD029F_D11_BE489901Ta14P036G06P012B101F1_089.ab1        1   453 (64)  C UCD029R_D11_BE489901Ta14P036G06P012B101R1_089.ab1   (114)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD029R_D11_BE489901Ta14P036G06P012B101R1_089.ab1   567 
  555    UCD029F_D11_BE489901Ta14P036G06P012B101F1_089.ab1   441 
Contig length: old 631, new 631

Contig length: old 631, new 631
New start: 0