No. words: 1112; after pruning: 1086


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:484)  437  2.26 0.00 0.41  UCD029F_E11_BE489901Ta15P036G06P012B101F1_087.ab1        1   486 (58)  C UCD029R_E11_BE489901Ta15P036G06P012B101R1_087.ab1   (84)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD029R_E11_BE489901Ta15P036G06P012B101R1_087.ab1   568 
  551    UCD029F_E11_BE489901Ta15P036G06P012B101F1_087.ab1   468 
Contig length: old 627, new 627

Contig length: old 627, new 628
New start: 0 
I Change at: 533; seg lengths: entry 1, contig 0