No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:456)  408  2.84 0.00 0.22  UCD029F_B12_BE489901Ta20P036G06P012B101F1_094.ab1        1   457 (67)  C UCD029R_B12_BE489901Ta20P036G06P012B101R1_094.ab1   (116)   456     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C UCD029R_B12_BE489901Ta20P036G06P012B101R1_094.ab1   572 
  487    UCD029F_B12_BE489901Ta20P036G06P012B101F1_094.ab1   371 
  504  C UCD029R_B12_BE489901Ta20P036G06P012B101R1_094.ab1    69 
  512    UCD029F_B12_BE489901Ta20P036G06P012B101F1_094.ab1   396 
  516  C UCD029R_B12_BE489901Ta20P036G06P012B101R1_094.ab1    57 
  528    UCD029F_B12_BE489901Ta20P036G06P012B101F1_094.ab1   412 
  548  C UCD029R_B12_BE489901Ta20P036G06P012B101R1_094.ab1    26 
  556    UCD029F_B12_BE489901Ta20P036G06P012B101F1_094.ab1   440 
Contig length: old 639, new 640

Contig length: old 640, new 640
New start: 0