No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 6.0 (1,1:469)  445  0.65 0.00 0.22  UCD029F_C12_BE489901Ta21P036G06P012B101F1_092.ab1        1   464 (64)  C UCD029R_C12_BE489901Ta21P036G06P012B101R1_092.ab1   (104)   469     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C UCD029R_C12_BE489901Ta21P036G06P012B101R1_092.ab1   573 
  295    UCD029F_C12_BE489901Ta21P036G06P012B101F1_092.ab1   191 
  304  C UCD029R_C12_BE489901Ta21P036G06P012B101R1_092.ab1   270 
  528    UCD029F_C12_BE489901Ta21P036G06P012B101F1_092.ab1   424 
  544  C UCD029R_C12_BE489901Ta21P036G06P012B101R1_092.ab1    31 
  552    UCD029F_C12_BE489901Ta21P036G06P012B101F1_092.ab1   448 
Contig length: old 631, new 632

Contig length: old 632, new 632
New start: 0