No. words: 1133; after pruning: 1107


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.6 (1,1:503)  483  0.60 0.00 0.20  UCD029F_D12_BE489901Ta22P036G06P012B101F1_090.ab1        1   502 (61)  C UCD029R_D12_BE489901Ta22P036G06P012B101R1_090.ab1   (67)   503     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD029R_D12_BE489901Ta22P036G06P012B101R1_090.ab1   570 
  528    UCD029F_D12_BE489901Ta22P036G06P012B101F1_090.ab1   461 
  537  C UCD029R_D12_BE489901Ta22P036G06P012B101R1_090.ab1    35 
  553    UCD029F_D12_BE489901Ta22P036G06P012B101F1_090.ab1   486 
Contig length: old 629, new 630

Contig length: old 630, new 630
New start: 0