No. words: 758; after pruning: 732


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:384)  212  1.35 0.00 0.00  UCD023F_C03_BE490204LD01P028E06P028E121F1_027.ab1        1   223 (0)  C UCD023R_C03_BE490204LD01P028E06P028E121R1_027.ab1   (150)   385   163 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1  C UCD023R_C03_BE490204LD01P028E06P028E121R1_027.ab1   535 
  246    UCD023F_C03_BE490204LD01P028E06P028E121F1_027.ab1    96 
  254  C UCD023R_C03_BE490204LD01P028E06P028E121R1_027.ab1   282 
Contig length: old 535, new 535

Contig length: old 535, new 535
New start: 0