No. words: 1126; after pruning: 1100


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:391)  374  0.51 0.26 0.26  UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1        1   392 (188)  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   (154)   392     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   546 
  261    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   106 
  301  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   246 
  369    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   214 
  393  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   154 
  401    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   246 
  409  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   138 
  433    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   278 
  441  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1   106 
  449    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   294 
  469  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1    78 
  473    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   318 
  516  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1    31 
  520    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   365 
  524  C UCD023R_H03_BE490204LD06P028E06P028E121R1_017.ab1    23 
  532    UCD023F_H03_BE490204LD06P028E06P028E121F1_017.ab1   377 
Contig length: old 734, new 735

Contig length: old 735, new 735
New start: 0