No. words: 745; after pruning: 719


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:390)  170  0.56 0.56 0.00  UCD023F_D04_BE490204LD10P028E06P028E121F1_026.ab1        1   179 (0)  C UCD023R_D04_BE490204LD10P028E06P028E121R1_026.ab1   (174)   392   213 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1  C UCD023R_D04_BE490204LD10P028E06P028E121R1_026.ab1   566 
  277    UCD023F_D04_BE490204LD10P028E06P028E121F1_026.ab1   102 
  281  C UCD023R_D04_BE490204LD10P028E06P028E121R1_026.ab1   286 
Contig length: old 566, new 566

Contig length: old 566, new 566
New start: 0