No. words: 1118; after pruning: 1092


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:396)  384  0.00 0.25 0.25  UCD023F_H04_BE490204LD14P028E06P028E121F1_018.ab1        1   397 (156)  C UCD023R_H04_BE490204LD14P028E06P028E121R1_018.ab1   (168)   397     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C UCD023R_H04_BE490204LD14P028E06P028E121R1_018.ab1   565 
  441    UCD023F_H04_BE490204LD14P028E06P028E121F1_018.ab1   272 
  473  C UCD023R_H04_BE490204LD14P028E06P028E121R1_018.ab1    93 
  481    UCD023F_H04_BE490204LD14P028E06P028E121F1_018.ab1   312 
  513  C UCD023R_H04_BE490204LD14P028E06P028E121R1_018.ab1    53 
  517    UCD023F_H04_BE490204LD14P028E06P028E121F1_018.ab1   348 
  541  C UCD023R_H04_BE490204LD14P028E06P028E121R1_018.ab1    25 
  553    UCD023F_H04_BE490204LD14P028E06P028E121F1_018.ab1   384 
Contig length: old 721, new 722

Contig length: old 722, new 722
New start: 0