No. words: 857; after pruning: 831


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:254)  240  0.39 0.39 0.00  UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1        1   255 (151)  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1   (195)   256     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  124 nodes

 64 str. conn. components

Path
    1  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1   451 
  274    UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1    78 
  278  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1   174 
  282    UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1    86 
  286  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1   166 
  298    UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1   102 
  382  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1    70 
  386    UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1   190 
  394  C UCD019R_H06_BE490267LD06P028B05B111R1_034.ab1    58 
  398    UCD019F_H06_BE490267LD06P028B05B111F1_034.ab1   202 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0