No. words: 1841; after pruning: 1815


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 20.1 (1,1:903)  884  0.00 0.00 0.00  UCD025F_C06_BE490384Sn25P001F04P021B081F1_044.ab1        1   904 (5)  C UCD025R_C06_BE490384Sn25P001F04P021B081R1_044.ab1   (28)   904     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  452 nodes

 228 str. conn. components

Path
    1  C UCD025R_C06_BE490384Sn25P001F04P021B081R1_044.ab1   932 
   34    UCD025F_C06_BE490384Sn25P001F04P021B081F1_044.ab1     6 
   38  C UCD025R_C06_BE490384Sn25P001F04P021B081R1_044.ab1   895 
   42    UCD025F_C06_BE490384Sn25P001F04P021B081F1_044.ab1    14 
  454  C UCD025R_C06_BE490384Sn25P001F04P021B081R1_044.ab1   479 
  458    UCD025F_C06_BE490384Sn25P001F04P021B081F1_044.ab1   430 
  566  C UCD025R_C06_BE490384Sn25P001F04P021B081R1_044.ab1   367 
  926    UCD025F_C06_BE490384Sn25P001F04P021B081F1_044.ab1   898 
Contig length: old 937, new 937

Contig length: old 937, new 937
New start: 0