No. words: 1811; after pruning: 1785


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 19.3 (1,1:893)  869  0.00 0.00 0.00  UCD025F_E06_BE490384Sn27P001F04P021B081F1_040.ab1        4   894 (22)  C UCD025R_E06_BE490384Sn27P001F04P021B081R1_040.ab1   (4)   891     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  448 nodes

 226 str. conn. components

Path
    1    UCD025F_E06_BE490384Sn27P001F04P021B081F1_040.ab1     1 
  531  C UCD025R_E06_BE490384Sn27P001F04P021B081R1_040.ab1   364 
  891    UCD025F_E06_BE490384Sn27P001F04P021B081F1_040.ab1   891 
Contig length: old 917, new 916

Contig length: old 916, new 916
New start: 0