No. words: 1803; after pruning: 1777


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.5 (1,1:888)  861  0.22 0.00 0.00  UCD025F_F06_BE490384Sn28P001F04P021B081F1_038.ab1        1   889 (8)  C UCD025R_F06_BE490384Sn28P001F04P021B081R1_038.ab1   (17)   889     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  442 nodes

 223 str. conn. components

Path
    1  C UCD025R_F06_BE490384Sn28P001F04P021B081R1_038.ab1   906 
   21    UCD025F_F06_BE490384Sn28P001F04P021B081F1_038.ab1     4 
   49  C UCD025R_F06_BE490384Sn28P001F04P021B081R1_038.ab1   858 
   58    UCD025F_F06_BE490384Sn28P001F04P021B081F1_038.ab1    41 
  546  C UCD025R_F06_BE490384Sn28P001F04P021B081R1_038.ab1   361 
  862    UCD025F_F06_BE490384Sn28P001F04P021B081F1_038.ab1   845 
  870  C UCD025R_F06_BE490384Sn28P001F04P021B081R1_038.ab1    37 
  902    UCD025F_F06_BE490384Sn28P001F04P021B081F1_038.ab1   885 
Contig length: old 914, new 914

Contig length: old 914, new 914
New start: 0