No. words: 1817; after pruning: 1791


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.9 (1,1:851)  826  0.00 0.00 0.12  UCD025F_F04_BE490384Ta12P001F04P021B081F1_022.ab1        1   852 (58)  C UCD025R_F04_BE490384Ta12P001F04P021B081R1_022.ab1   (56)   851     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  424 nodes

 214 str. conn. components

Path
    1  C UCD025R_F04_BE490384Ta12P001F04P021B081R1_022.ab1   907 
   60    UCD025F_F04_BE490384Ta12P001F04P021B081F1_022.ab1     4 
   80  C UCD025R_F04_BE490384Ta12P001F04P021B081R1_022.ab1   828 
   93    UCD025F_F04_BE490384Ta12P001F04P021B081F1_022.ab1    38 
  101  C UCD025R_F04_BE490384Ta12P001F04P021B081R1_022.ab1   807 
  105    UCD025F_F04_BE490384Ta12P001F04P021B081F1_022.ab1    50 
  565  C UCD025R_F04_BE490384Ta12P001F04P021B081R1_022.ab1   343 
  901    UCD025F_F04_BE490384Ta12P001F04P021B081F1_022.ab1   846 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0