No. words: 1631; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:860)  742  0.00 0.13 0.00  UCD025F_G05_BE490384Ta21P001F04P021B081F1_035.ab1        1   764 (0)  C UCD025R_G05_BE490384Ta21P001F04P021B081R1_035.ab1   (6)   861    97 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C UCD025R_G05_BE490384Ta21P001F04P021B081R1_035.ab1   867 
   11    UCD025F_G05_BE490384Ta21P001F04P021B081F1_035.ab1     5 
  484  C UCD025R_G05_BE490384Ta21P001F04P021B081R1_035.ab1   383 
  488    UCD025F_G05_BE490384Ta21P001F04P021B081F1_035.ab1   482 
  512  C UCD025R_G05_BE490384Ta21P001F04P021B081R1_035.ab1   355 
Contig length: old 867, new 866

Contig length: old 866, new 866
New start: 0