No. words: 1383; after pruning: 1357


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:1049)  314  0.30 0.00 0.00  UCD007F_D09_BE490763LD09P012G06P012G121F1_073.ab1      381   713 (0)  C UCD007R_D09_BE490763LD09P012G06P012G121R1_073.ab1   (0)   670   338 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    UCD007F_D09_BE490763LD09P012G06P012G121F1_073.ab1     1 
  514  C UCD007R_D09_BE490763LD09P012G06P012G121R1_073.ab1   537 
  518    UCD007F_D09_BE490763LD09P012G06P012G121F1_073.ab1   518 
  562  C UCD007R_D09_BE490763LD09P012G06P012G121R1_073.ab1   489 
  570    UCD007F_D09_BE490763LD09P012G06P012G121F1_073.ab1   570 
  574  C UCD007R_D09_BE490763LD09P012G06P012G121R1_073.ab1   477 
  594    UCD007F_D09_BE490763LD09P012G06P012G121F1_073.ab1   594 
  598  C UCD007R_D09_BE490763LD09P012G06P012G121R1_073.ab1   453 
Contig length: old 1050, new 1050

Contig length: old 1050, new 1050
New start: 0