No. words: 1389; after pruning: 1363


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:1103)  266  0.70 0.00 0.00  UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1      511   795 (0)  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   (0)   594   310 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1     1 
  588  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   517 
  592    UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1   592 
  612  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   493 
  620    UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1   620 
  632  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   473 
  636    UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1   636 
  644  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   461 
  656    UCD007F_F09_BE490763LD11P012G06P012G121F1_069.ab1   656 
  660  C UCD007R_F09_BE490763LD11P012G06P012G121R1_069.ab1   445 
Contig length: old 1104, new 1104

Contig length: old 1104, new 1104
New start: 0