No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.1 (1,1:857)  207  0.00 0.00 0.44  UCD029F_F03_BE490763Sn24P025C11P036B031F1_021.ab1       88   315 (0)  C UCD029R_F03_BE490763Sn24P025C11P036B031R1_021.ab1   (0)   770   544 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  110 nodes

 57 str. conn. components

Path
    1    UCD029F_F03_BE490763Sn24P025C11P036B031F1_021.ab1     1 
  224  C UCD029R_F03_BE490763Sn24P025C11P036B031R1_021.ab1   635 
  240    UCD029F_F03_BE490763Sn24P025C11P036B031F1_021.ab1   240 
  252  C UCD029R_F03_BE490763Sn24P025C11P036B031R1_021.ab1   607 
  264    UCD029F_F03_BE490763Sn24P025C11P036B031F1_021.ab1   264 
  272  C UCD029R_F03_BE490763Sn24P025C11P036B031R1_021.ab1   587 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0