No. words: 1763; after pruning: 1700


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:904)  784  0.36 0.12 0.12  UCD029F_H03_BE490763Sn26P025C11P036B031F1_017.ab1        1   834 (0)  C UCD029R_H03_BE490763Sn26P025C11P036B031R1_017.ab1   (24)   905    72 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1  C UCD029R_H03_BE490763Sn26P025C11P036B031R1_017.ab1   929 
   28    UCD029F_H03_BE490763Sn26P025C11P036B031F1_017.ab1     4 
  344  C UCD029R_H03_BE490763Sn26P025C11P036B031R1_017.ab1   586 
Contig length: old 929, new 929

Contig length: old 929, new 929
New start: 0