No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.1 (1,1:914)  482  0.00 0.00 0.00  UCD029F_A04_BE490763Sn27P025C11P036B031F1_032.ab1       40   551 (1)  C UCD029R_A04_BE490763Sn27P025C11P036B031R1_032.ab1   (0)   876   365 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    UCD029F_A04_BE490763Sn27P025C11P036B031F1_032.ab1     1 
  275  C UCD029R_A04_BE490763Sn27P025C11P036B031R1_032.ab1   641 
  283    UCD029F_A04_BE490763Sn27P025C11P036B031F1_032.ab1   283 
  307  C UCD029R_A04_BE490763Sn27P025C11P036B031R1_032.ab1   609 
  315    UCD029F_A04_BE490763Sn27P025C11P036B031F1_032.ab1   315 
  323  C UCD029R_A04_BE490763Sn27P025C11P036B031R1_032.ab1   593 
  335    UCD029F_A04_BE490763Sn27P025C11P036B031F1_032.ab1   335 
  343  C UCD029R_A04_BE490763Sn27P025C11P036B031R1_032.ab1   573 
Contig length: old 915, new 915

Contig length: old 915, new 915
New start: 0