No. words: 1701; after pruning: 1675


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:914)  713  0.00 0.13 0.00  UCD029F_B04_BE490763Sn28P025C11P036B031F1_030.ab1        1   759 (0)  C UCD029R_B04_BE490763Sn28P025C11P036B031R1_030.ab1   (26)   916   157 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C UCD029R_B04_BE490763Sn28P025C11P036B031R1_030.ab1   942 
   30    UCD029F_B04_BE490763Sn28P025C11P036B031F1_030.ab1     4 
  347  C UCD029R_B04_BE490763Sn28P025C11P036B031R1_030.ab1   595 
  395    UCD029F_B04_BE490763Sn28P025C11P036B031F1_030.ab1   369 
  415  C UCD029R_B04_BE490763Sn28P025C11P036B031R1_030.ab1   527 
Contig length: old 942, new 941

Contig length: old 941, new 941
New start: 0