No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:888)  411  0.45 0.00 0.22  UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1      118   565 (0)  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   (0)   772   326 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1     1 
  213  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   677 
  217    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   217 
  257  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   633 
  261    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   261 
  273  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   617 
  277    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   277 
  281  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   609 
  285    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   285 
  293  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   597 
  297    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   297 
  309  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   581 
  321    UCD029F_F01_BE490763Sn30P025A11P036B031F1_005.ab1   321 
  325  C UCD029R_F01_BE490763Sn30P025A11P036B031R1_005.ab1   565 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0