No. words: 1040; after pruning: 1014


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:825)  192  0.47 0.00 0.00  UCD029F_D04_BE490763Sn30P025C11P036B031F1_026.ab1       80   293 (0)  C UCD029R_D04_BE490763Sn30P025C11P036B031R1_026.ab1   (0)   747   534 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1    UCD029F_D04_BE490763Sn30P025C11P036B031F1_026.ab1     1 
  179  C UCD029R_D04_BE490763Sn30P025C11P036B031R1_026.ab1   648 
  191    UCD029F_D04_BE490763Sn30P025C11P036B031F1_026.ab1   191 
  195  C UCD029R_D04_BE490763Sn30P025C11P036B031R1_026.ab1   632 
  199    UCD029F_D04_BE490763Sn30P025C11P036B031F1_026.ab1   199 
  207  C UCD029R_D04_BE490763Sn30P025C11P036B031R1_026.ab1   620 
Contig length: old 826, new 826

Contig length: old 826, new 826
New start: 0