No. words: 1359; after pruning: 1333


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:959)  382  0.00 0.00 0.00  UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1      267   665 (0)  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   (0)   694   296 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1    UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1     1 
  354  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   607 
  358    UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1   358 
  366  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   595 
  374    UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1   374 
  406  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   555 
  430    UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1   430 
  434  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   527 
  446    UCD015F_H09_BE490763Sn30P025H10P012G121F1_065.ab1   446 
  450  C UCD015R_H09_BE490763Sn30P025H10P012G121R1_065.ab1   511 
Contig length: old 960, new 960

Contig length: old 960, new 960
New start: 0