No. words: 1104; after pruning: 1078


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:892)  195  0.47 0.00 0.00  UCD028F_E11_BE490763Ta11P025A11P036B031F1_087.ab1      162   372 (0)  C UCD028R_E11_BE490763Ta11P025A11P036B031R1_087.ab1   (0)   732   522 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1    UCD028F_E11_BE490763Ta11P025A11P036B031F1_087.ab1     1 
  257  C UCD028R_E11_BE490763Ta11P025A11P036B031R1_087.ab1   637 
  261    UCD028F_E11_BE490763Ta11P025A11P036B031F1_087.ab1   261 
  273  C UCD028R_E11_BE490763Ta11P025A11P036B031R1_087.ab1   621 
  277    UCD028F_E11_BE490763Ta11P025A11P036B031F1_087.ab1   277 
  281  C UCD028R_E11_BE490763Ta11P025A11P036B031R1_087.ab1   613 
  293    UCD028F_E11_BE490763Ta11P025A11P036B031F1_087.ab1   293 
  305  C UCD028R_E11_BE490763Ta11P025A11P036B031R1_087.ab1   589 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0