No. words: 1354; after pruning: 1328


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:852)  462  0.80 0.00 0.00  UCD029F_A02_BE490763Ta11P025C11P036B031F1_016.ab1       86   586 (0)  C UCD029R_A02_BE490763Ta11P025C11P036B031R1_016.ab1   (0)   768   268 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    UCD029F_A02_BE490763Ta11P025C11P036B031F1_016.ab1     1 
  232  C UCD029R_A02_BE490763Ta11P025C11P036B031R1_016.ab1   622 
  244    UCD029F_A02_BE490763Ta11P025C11P036B031F1_016.ab1   244 
  256  C UCD029R_A02_BE490763Ta11P025C11P036B031R1_016.ab1   598 
  264    UCD029F_A02_BE490763Ta11P025C11P036B031F1_016.ab1   264 
  276  C UCD029R_A02_BE490763Ta11P025C11P036B031R1_016.ab1   578 
  529    UCD029F_A02_BE490763Ta11P025C11P036B031F1_016.ab1   529 
  533  C UCD029R_A02_BE490763Ta11P025C11P036B031R1_016.ab1   321 
Contig length: old 853, new 853

Contig length: old 853, new 853
New start: 0 
S Change at: 140; seg lengths: entry 1, contig 1
S Change at: 144; seg lengths: entry 1, contig 1