No. words: 1427; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:907)  486  0.39 0.00 0.00  UCD028F_F11_BE490763Ta12P025A11P036B031F1_085.ab1      123   641 (0)  C UCD028R_F11_BE490763Ta12P025A11P036B031R1_085.ab1   (0)   786   268 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    UCD028F_F11_BE490763Ta12P025A11P036B031F1_085.ab1     1 
  279  C UCD028R_F11_BE490763Ta12P025A11P036B031R1_085.ab1   630 
  283    UCD028F_F11_BE490763Ta12P025A11P036B031F1_085.ab1   283 
  335  C UCD028R_F11_BE490763Ta12P025A11P036B031R1_085.ab1   574 
  375    UCD028F_F11_BE490763Ta12P025A11P036B031F1_085.ab1   375 
  379  C UCD028R_F11_BE490763Ta12P025A11P036B031R1_085.ab1   530 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0