No. words: 1656; after pruning: 1616


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:873)  701  0.13 0.00 0.00  UCD029F_B02_BE490763Ta12P025C11P036B031F1_014.ab1        1   741 (0)  C UCD029R_B02_BE490763Ta12P025C11P036B031R1_014.ab1   (41)   874   134 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C UCD029R_B02_BE490763Ta12P025C11P036B031R1_014.ab1   915 
   50    UCD029F_B02_BE490763Ta12P025C11P036B031F1_014.ab1     9 
  258  C UCD029R_B02_BE490763Ta12P025C11P036B031R1_014.ab1   658 
  262    UCD029F_B02_BE490763Ta12P025C11P036B031F1_014.ab1   221 
  278  C UCD029R_B02_BE490763Ta12P025C11P036B031R1_014.ab1   638 
  286    UCD029F_B02_BE490763Ta12P025C11P036B031F1_014.ab1   245 
  306  C UCD029R_B02_BE490763Ta12P025C11P036B031R1_014.ab1   610 
Contig length: old 915, new 915

Contig length: old 915, new 915
New start: 0