No. words: 1702; after pruning: 1676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 17.5 (1,1:868)  785  0.12 0.00 0.00  UCD029F_C02_BE490763Ta13P025C11P036B031F1_012.ab1        6   831 (0)  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   (7)   864    39 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   871 
   19    UCD029F_C02_BE490763Ta13P025C11P036B031F1_012.ab1    17 
  279  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   593 
  283    UCD029F_C02_BE490763Ta13P025C11P036B031F1_012.ab1   281 
  299  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   573 
  303    UCD029F_C02_BE490763Ta13P025C11P036B031F1_012.ab1   301 
  323  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   549 
  347    UCD029F_C02_BE490763Ta13P025C11P036B031F1_012.ab1   345 
  371  C UCD029R_C02_BE490763Ta13P025C11P036B031R1_012.ab1   501 
Contig length: old 871, new 871

Contig length: old 871, new 871
New start: 0