No. words: 1205; after pruning: 1179


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:868)  300  1.79 0.00 0.00  UCD028F_H11_BE490763Ta14P025A11P036B031F1_081.ab1       99   434 (0)  C UCD028R_H11_BE490763Ta14P025A11P036B031R1_081.ab1   (0)   771   436 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1    UCD028F_H11_BE490763Ta14P025A11P036B031F1_081.ab1     1 
  202  C UCD028R_H11_BE490763Ta14P025A11P036B031R1_081.ab1   668 
  210    UCD028F_H11_BE490763Ta14P025A11P036B031F1_081.ab1   210 
  226  C UCD028R_H11_BE490763Ta14P025A11P036B031R1_081.ab1   644 
  238    UCD028F_H11_BE490763Ta14P025A11P036B031F1_081.ab1   238 
  246  C UCD028R_H11_BE490763Ta14P025A11P036B031R1_081.ab1   624 
  266    UCD028F_H11_BE490763Ta14P025A11P036B031F1_081.ab1   266 
  270  C UCD028R_H11_BE490763Ta14P025A11P036B031R1_081.ab1   600 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0