No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:847)  177  3.70 0.00 0.00  UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1      110   325 (0)  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   (0)   739   524 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1     1 
  113  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   736 
  117    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1   117 
  121  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   728 
  125    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1   125 
  141  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   708 
  145    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1   145 
  149  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   700 
  160    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1   160 
  168  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   681 
  188    UCD028F_B12_BE490763Ta16P025A11P036B031F1_094.ab1   188 
  196  C UCD028R_B12_BE490763Ta16P025A11P036B031R1_094.ab1   653 
Contig length: old 848, new 848

Contig length: old 848, new 848
New start: 0