No. words: 1516; after pruning: 1490


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:1001)  472  0.59 0.39 0.00  UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1      291   802 (0)  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   (0)   714   201 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1     1 
  480  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   523 
  484    UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1   484 
  508  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   495 
  516    UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1   516 
  528  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   475 
  532    UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1   532 
  540  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   463 
  544    UCD015F_G08_BE490763Ta17P025H10P012G121F1_052.ab1   544 
  548  C UCD015R_G08_BE490763Ta17P025H10P012G121R1_052.ab1   455 
Contig length: old 1002, new 1002

Contig length: old 1002, new 1002
New start: 0