No. words: 1037; after pruning: 1011


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:823)  190  0.94 0.00 0.00  UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1       73   285 (0)  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   (0)   752   540 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1     1 
   83  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   742 
   87    UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1    87 
   95  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   730 
   99    UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1    99 
  126  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   699 
  130    UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1   130 
  154  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   671 
  177    UCD029F_H02_BE490763Ta18P025C11P036B031F1_002.ab1   177 
  181  C UCD029R_H02_BE490763Ta18P025C11P036B031R1_002.ab1   644 
Contig length: old 824, new 824

Contig length: old 824, new 824
New start: 0 
S Change at: 122; seg lengths: entry 1, contig 1