No. words: 1302; after pruning: 1276


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:1008)  268  1.37 0.00 0.00  UCD015F_A09_BE490763Ta19P025H10P012G121F1_079.ab1      415   707 (0)  C UCD015R_A09_BE490763Ta19P025H10P012G121R1_079.ab1   (0)   595   303 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    UCD015F_A09_BE490763Ta19P025H10P012G121F1_079.ab1     1 
  505  C UCD015R_A09_BE490763Ta19P025H10P012G121R1_079.ab1   505 
  513    UCD015F_A09_BE490763Ta19P025H10P012G121F1_079.ab1   513 
  525  C UCD015R_A09_BE490763Ta19P025H10P012G121R1_079.ab1   485 
  533    UCD015F_A09_BE490763Ta19P025H10P012G121F1_079.ab1   533 
  549  C UCD015R_A09_BE490763Ta19P025H10P012G121R1_079.ab1   461 
  553    UCD015F_A09_BE490763Ta19P025H10P012G121F1_079.ab1   553 
  557  C UCD015R_A09_BE490763Ta19P025H10P012G121R1_079.ab1   453 
Contig length: old 1009, new 1009

Contig length: old 1009, new 1009
New start: 0