No. words: 1044; after pruning: 1018


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.6 (1,1:860)  160  1.64 0.00 0.00  UCD029F_B03_BE490763Ta20P025C11P036B031F1_029.ab1      133   315 (0)  C UCD029R_B03_BE490763Ta20P025C11P036B031R1_029.ab1   (0)   729   547 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    UCD029F_B03_BE490763Ta20P025C11P036B031F1_029.ab1     1 
  201  C UCD029R_B03_BE490763Ta20P025C11P036B031R1_029.ab1   661 
  205    UCD029F_B03_BE490763Ta20P025C11P036B031F1_029.ab1   205 
  225  C UCD029R_B03_BE490763Ta20P025C11P036B031R1_029.ab1   637 
  249    UCD029F_B03_BE490763Ta20P025C11P036B031F1_029.ab1   249 
  253  C UCD029R_B03_BE490763Ta20P025C11P036B031R1_029.ab1   609 
  257    UCD029F_B03_BE490763Ta20P025C11P036B031F1_029.ab1   257 
  269  C UCD029R_B03_BE490763Ta20P025C11P036B031R1_029.ab1   593 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0