No. words: 1245; after pruning: 1219


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:958)  248  2.80 0.00 0.00  UCD015F_C09_BE490763Ta21P025H10P012G121F1_075.ab1      428   713 (0)  C UCD015R_C09_BE490763Ta21P025H10P012G121R1_075.ab1   (0)   532   247 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  120 nodes

 62 str. conn. components

Path
    1    UCD015F_C09_BE490763Ta21P025H10P012G121F1_075.ab1     1 
  519  C UCD015R_C09_BE490763Ta21P025H10P012G121R1_075.ab1   441 
  523    UCD015F_C09_BE490763Ta21P025H10P012G121F1_075.ab1   523 
  543  C UCD015R_C09_BE490763Ta21P025H10P012G121R1_075.ab1   417 
  551    UCD015F_C09_BE490763Ta21P025H10P012G121F1_075.ab1   551 
  573  C UCD015R_C09_BE490763Ta21P025H10P012G121R1_075.ab1   387 
  589    UCD015F_C09_BE490763Ta21P025H10P012G121F1_075.ab1   589 
  597  C UCD015R_C09_BE490763Ta21P025H10P012G121R1_075.ab1   363 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0