No. words: 1191; after pruning: 1165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:885)  286  0.00 0.00 0.00  UCD029F_B01_BE490763Ta22P025A11P036B031F1_013.ab1       73   377 (0)  C UCD029R_B01_BE490763Ta22P025A11P036B031R1_013.ab1   (0)   814   510 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1    UCD029F_B01_BE490763Ta22P025A11P036B031F1_013.ab1     1 
  272  C UCD029R_B01_BE490763Ta22P025A11P036B031R1_013.ab1   615 
  280    UCD029F_B01_BE490763Ta22P025A11P036B031F1_013.ab1   280 
  304  C UCD029R_B01_BE490763Ta22P025A11P036B031R1_013.ab1   583 
  312    UCD029F_B01_BE490763Ta22P025A11P036B031F1_013.ab1   312 
  316  C UCD029R_B01_BE490763Ta22P025A11P036B031R1_013.ab1   571 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0