No. words: 1088; after pruning: 1062


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:856)  214  0.00 0.00 0.00  UCD029F_E03_BE490763Ta23P025C11P036B031F1_023.ab1       85   315 (0)  C UCD029R_E03_BE490763Ta23P025C11P036B031R1_023.ab1   (0)   773   543 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1    UCD029F_E03_BE490763Ta23P025C11P036B031F1_023.ab1     1 
  200  C UCD029R_E03_BE490763Ta23P025C11P036B031R1_023.ab1   658 
  204    UCD029F_E03_BE490763Ta23P025C11P036B031F1_023.ab1   204 
  232  C UCD029R_E03_BE490763Ta23P025C11P036B031R1_023.ab1   626 
  244    UCD029F_E03_BE490763Ta23P025C11P036B031F1_023.ab1   244 
  252  C UCD029R_E03_BE490763Ta23P025C11P036B031R1_023.ab1   606 
  260    UCD029F_E03_BE490763Ta23P025C11P036B031F1_023.ab1   260 
  272  C UCD029R_E03_BE490763Ta23P025C11P036B031R1_023.ab1   586 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0