No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:896)  168  0.54 0.00 0.00  UCD028F_D10_BE490763Td02P025A11P036B031F1_074.ab1      194   377 (0)  C UCD028R_D10_BE490763Td02P025A11P036B031R1_074.ab1   (0)   704   521 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    UCD028F_D10_BE490763Td02P025A11P036B031F1_074.ab1     1 
  234  C UCD028R_D10_BE490763Td02P025A11P036B031R1_074.ab1   664 
  238    UCD028F_D10_BE490763Td02P025A11P036B031F1_074.ab1   238 
  274  C UCD028R_D10_BE490763Td02P025A11P036B031R1_074.ab1   624 
  282    UCD028F_D10_BE490763Td02P025A11P036B031F1_074.ab1   282 
  290  C UCD028R_D10_BE490763Td02P025A11P036B031R1_074.ab1   608 
  294    UCD028F_D10_BE490763Td02P025A11P036B031F1_074.ab1   294 
  314  C UCD028R_D10_BE490763Td02P025A11P036B031R1_074.ab1   584 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0