No. words: 1232; after pruning: 1206


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -4.2 -4.2 (1,1:979)  199  4.42 0.40 0.00  UCD015F_B07_BE490763Td04P025H10P012G121F1_061.ab1      341   589 (1)  C UCD015R_B07_BE490763Td04P025H10P012G121R1_061.ab1   (1)   641   392 *
  Worst pair: offset 1 
LLR breakdown: discreps: -8.9 (<20 part: -6.2 (#=11), >20:-2.7 (#=1); in HQ: -8.9, out HQ 0.0), match: 5.3  trail: -0.4  lead: -0.3  total: -4.3  199  4.42 0.40 0.00  UCD015F_B07_BE490763Td04P025H10P012G121F1_061.ab1      341   589 (1)  C UCD015R_B07_BE490763Td04P025H10P012G121R1_061.ab1   (1)   641   392 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.2       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    UCD015F_B07_BE490763Td04P025H10P012G121F1_061.ab1     1 
  352  C UCD015R_B07_BE490763Td04P025H10P012G121R1_061.ab1   630 
Contig length: old 980, new 981

Contig length: old 981, new 981
New start: 0